Bioinformatics Methods in Identification Protein Function | Domains |Trans-membrane etc.,
Автор: Bioinformatics With BB
Загружено: 2020-06-27
Просмотров: 37092
In this video we used multiple computational prediction tools to perform various protein sequence annotations such as Physio-Chemical Properties, Identification Domains, Transmemrane Regions Prediction, Secondary Structural Elements, Solvent Accessibility Surface Area etc.,
Input: You need provide only Single Letter Amino acid sequence in FASTA format.
Sequence Retrieval Databases :
https://www.ncbi.nlm.nih.gov/protein/
https://www.ensembl.org/
https://www.genome.jp/kegg/genes.html
https://www.uniprot.org/
Protein Sequence Annotation Databases
1. Physico-Chemical Properties Prediction Tools
https://web.expasy.org/protparam/
http://www.tulane.edu/~biochem/WW/Pep...
2. Domain Prediction Tools
http://www.ebi.ac.uk/interpro/search/...
http://smart.embl-heidelberg.de/
https://pfam.xfam.org/
3. Trans-membrane Prediction Tools
http://www.cbs.dtu.dk/services/TMHMM/
https://embnet.vital-it.ch/software/T...
4. Secondary Structural Elements and Solvent Accessibility
http://www.cbs.dtu.dk/services/NetSurfP/
http://sable.cchmc.org/
5. Multiple Annotations Tools
https://www.predictprotein.org/home
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