Three approaches to organize your R project (CC178)

Having a well organized project directory is critical to the reproducibility of any R project. In this tutorial, Pat shows three approaches you can take to organize your R project and the strengths and weaknesses of each approach. These approaches include using Finder/Windows Explorer, base R, and bash with git, all of which can be done from within Rstudio. This is part of a series of videos demonstrating how to functions from base R to make these data compatible with tools from the tidyverse

You can find my blog post for this episode at https://www.riffomonas.org/code_club/....

The data were generated in our Kozich et al. 2013 paper (http://doi.org/10.1128/AEM.01043-13) using samples from the Schloss et al. 2012 paper (http://doi.org/10.4161/gmic.21008).

#baseR #bash #git

Want more practice on the concepts covered in Code Club? You can sign up for my weekly newsletter at https://shop.riffomonas.org/youtube to get practice problems, tips, and insights.

If you're interested in taking an upcoming 3 day R workshop be sure to check out our schedule at https://riffomonas.org/workshops/

You can also find complete tutorials for learning R with the tidyverse using...
Microbial ecology data: https://www.riffomonas.org/minimalR/
General data: https://www.riffomonas.org/generalR/

0:00 Creating organization for your R project
2:34 Using a graphical user interface (GUI)
4:45 Using base R functions
12:11 Using command line