Estimation of relative abundance of species in metagenome data 2 of 3 | bracken and tables merging
Автор: R&Omics
Загружено: 2024-03-09
Просмотров: 876
Metagenomics tutorial
Complete pipeline for estimating the relative abundance of microbial species using kraken and bracken, starting from paired end fastq files
Github repository:
https://github.com/malina-dva/Estimat...
kranek2 and braken indexes:
https://benlangmead.github.io/aws-ind...
Chapters
00:00 Intro
03:07 Run bracken
04:30 Explore bracken output
08:00 Merge the outputs from bracken utilizing a python script
Disclaimer: "The views and opinions expressed in these tutorials are my own and do not reflect the views and opinions of my previous or current employers."
#kraken #bracken #linux #python #relativeabundance #kraken2 #taxpasta #metagenome #sequencing
#bioinformatics #bioinformática #bioinformaticsforbeginners #genome #genomics #genomesequencing #datascience #metagenomics #linuxforbeginners #kraken #bracken #linux #python #relativeabundance #kraken2
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