TASSEL Workshop Part 2: LD, PCA, Kinship, and GWAS
Автор: University of Minnesota Plant Breeding Center
Загружено: 2021-01-22
Просмотров: 17207
The University of Minnesota Plant Breeding Center hosts a workshop of the software package TASSEL (Trait Analysis by aSSociation, Evolution and Linkage) from the Buckler Lab at Cornell University. Overview of TASSEL functions including file format conversion, genotype imputation (Part 1) and LD, PCA, Kinship, and GWAS (Part 2).
Part 1: • TASSEL Workshop Part 1: overview, resource...
Install TASSEL: https://www.maizegenetics.net/tassel
Presentation slides and sample data used during the workshop: https://github.com/SushanRu/TASSEL-wo...
0:36 Example files overview
6:11 Phenotype data summary
8:23 Genotype data summary
13:22 Linkage Disequilibrium (LD)
19:12 Principle Component Analysis (PCA)
26:51 Kinship
28:25 Genome-wide Association Study (GWAS)
Instructors:
Dr. Sushan Ru, email: sru@umn.edu
Dr. Prabin Bajgain, email: bajga002@umn.edu
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/ umnplantbreed
/ plant-breeding-center-university-of-minnesota
Find the latest news and info on our opportunities for plant breeding collaboration and education: https://plantbreed.umn.edu/
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