What do our ATACseq Peak Files look like? Let's Load them (Granges) and see ! (John Rinn Teaching)
Автор: Rinnformatics (John Rinn teaching)
Загружено: 2025-04-23
Просмотров: 66
Here we are going to load in our peak files and see all the information and how they are formatted etc. Then we will make a handy function "import_peaks()" that we can use in the future to load in any ATACseq peak file !
The data for this lesson is here ( the .broadPeak files):
Mouse .broadPeak files for this specific lesson - but same thing can be applied to any other ATACseq output peak files.
https://rinnformatics.colorado.edu/mo...
John Rinn Github for this class:
https://github.com/boulderrinnlab/MAS...
John Rinn CGL Website for this class:
https://www.lncrna.io/cgl-level-9
-ATACseq OUTPUT FILES HERE:
https://rinnformatics.colorado.edu/mo...
John Rinn BioFrontiers:
https://www.colorado.edu/biofrontiers...
John Rinn Lab:
http://www.lncRNA.io
John Rinn Teaching:
http://www.lncrna.io/teaching
John Rinn University of Colorado Boulder Biochemistry:
https://www.colorado.edu/biochemistry...
John Rinn Linkedin:
/ john-rinn
#johnrinn
#ATACseq
#iranges
#granges
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