Single-cell pseudotime and gene regulatory analysis with CellOracle
Автор: Sanbomics
Загружено: 2023-12-18
Просмотров: 7585
CellOracle is a powerful suite of tools that can perform pseudotime analysis, gene regulatory network analysis, and in silico perturbation analysis on single-cell data in python. This is a simple tutorial covering the basics of CellOracle while analyzing a developmental pancreas dataset.
Notebook:
https://github.com/mousepixels/sanbom...
Reference:
https://www.nature.com/articles/s4158...
0:00 Intro
1:07 Prepare
4:15 Pseudotime
8:56 Regulatory
14:20 Perturbation
20:22 Conclusions
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