R&Omics
Bioinformatics tutorials and more, suitable for beginners and advanced learners.
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Disclaimer: "The views and opinions expressed in these tutorials are my own and do not reflect the views and opinions of my previous or current employers. The tutorials are based on information communicated in research articles, online instructions and R vignettes that are freely available to everyone"
How to convert html output into GitHub instructions file?
How to Convert Rmd file to R script with one line of code
Upload folder to GitHub remotely (with a personal token) | update 2024
Alpha and beta diversity (clearly explained)
16S downstream analysis in Colorectal Carcinoma I Co-abundance networks (5 of 5)
16S downstream analysis in Colorectal Carcinoma I Differentially abund taxa (4 of 5)
16S downstream analysis in Colorectal Carcinoma I Alpha and Beta diversity (3 of 5)
16S downstream analysis in Colorectal Carcinoma I Study Design and Data Norm (2 of 5)
Psycho-Pharmacomicrobiomics: A Systematic Review and Meta-Analysis | (2 of 2)
The role of the human microbiome in health and disease| Intro (1 of 2)
Building co-expression network from gene expression data | R tutorial (2 of 2)
Building co-expression network from gene expression data | Cytoscape
Building co-expression network from gene expression data | R tutorial (1 of 2)
Building co-expression network from gene expression data | Intro
Estimation of relative abundance of species in metagenome data 3 of 3 | full taxa lineage (taxpasta)
Estimation of relative abundance of species in metagenome data 2 of 3 | bracken and tables merging
Estimation of relative abundance of species in metagenome data 1 of 3 | Set up and kraken2 run
Randomly subsample reads from paired end FASTQ files
Archiving and compressing folders Linux, Mac and Windows
Running task in the background (Linux, Mac) with SCREEN
Three ways to check the number of CPUs (Windows, Linux, Mac)
How is genome structure linked to transcription changes during muscle cell differentiation?
Designing PCR primers for the spike protein of SARs-CoV2 (tutorial)
Mitochondrial DNA forms specific interactions with nuclear loci in mammalian cells (PhD project)
RNA-seq: Data normalization and clustering in R (beginners)